Detailed information of SNP:
|
SNP ID:
sf1004770468(Gbrowse)
Chromosome: chr10 Position: 4770468 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 72.08% | 27.92% |
| All Indica | 797 | 61.73% | 38.27% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 56.27% | 43.73% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 334 | 84.73% | 15.27% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004770468 | C->T | INTERGENIC | None |