Detailed information of SNP:
|
SNP ID:
sf1004773347(Gbrowse)
Chromosome: chr10 Position: 4773347 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 67.63% | 32.37% |
| All Indica | 796 | 60.55% | 39.45% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 55.65% | 44.35% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004773347 | G->T | INTERGENIC | None |