Detailed information of SNP:
|
SNP ID:
sf1004778147(Gbrowse)
Chromosome: chr10 Position: 4778147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.35% | 27.65% |
| All Indica | 795 | 74.47% | 25.53% |
| All Japonica | 496 | 78.02% | 21.98% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 372 | 66.67% | 33.33% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 334 | 77.54% | 22.46% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004778147 | G->A | INTERGENIC | None |