Detailed information of SNP:
|
SNP ID:
sf1004783089(Gbrowse)
Chromosome: chr10 Position: 4783089 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 73.37% | 26.63% |
| All Indica | 714 | 63.31% | 36.69% |
| All Japonica | 479 | 86.43% | 13.57% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 342 | 69.59% | 30.41% |
| Indica II | 185 | 51.35% | 48.65% |
| Indica Intermediate | 187 | 63.64% | 36.36% |
| Temperate Japonica | 330 | 87.58% | 12.42% |
| Tropical Japonica | 83 | 84.34% | 15.66% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004783089 | A->G | INTERGENIC | None |