Detailed information of SNP:
|
SNP ID:
sf1004847778(Gbrowse)
Chromosome: chr10 Position: 4847778 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 56.10% | 43.90% |
| All Indica | 779 | 64.06% | 35.94% |
| All Japonica | 494 | 39.68% | 60.32% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 364 | 60.99% | 39.01% |
| Indica II | 209 | 60.77% | 39.23% |
| Indica Intermediate | 206 | 72.82% | 27.18% |
| Temperate Japonica | 334 | 38.92% | 61.08% |
| Tropical Japonica | 92 | 43.48% | 56.52% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004847778 | A->G | INTERGENIC | None |