Detailed information of SNP:
|
SNP ID:
sf1004851628(Gbrowse)
Chromosome: chr10 Position: 4851628 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 68.74% | 31.26% |
| All Indica | 798 | 65.04% | 34.96% |
| All Japonica | 496 | 68.35% | 31.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004851628 | A->T | LOC_Os10g08930(LOC_Os10g08930.1) | UTR_3_PRIME |