Detailed information of SNP:
|
SNP ID:
sf1004851871(Gbrowse)
Chromosome: chr10 Position: 4851871 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 69.31% | 30.69% |
| All Indica | 799 | 65.46% | 34.54% |
| All Japonica | 492 | 69.31% | 30.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 68.96% | 31.04% |
| Tropical Japonica | 89 | 68.54% | 31.46% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004851871 | G->T | INTERGENIC | None |