Detailed information of SNP:
|
SNP ID:
sf1004868108(Gbrowse)
Chromosome: chr10 Position: 4868108 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 55.84% | 44.16% |
| All Indica | 758 | 91.03% | 8.97% |
| All Japonica | 469 | 7.25% | 92.75% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 368 | 94.84% | 5.16% |
| Indica II | 193 | 88.08% | 11.92% |
| Indica Intermediate | 197 | 86.80% | 13.20% |
| Temperate Japonica | 321 | 1.25% | 98.75% |
| Tropical Japonica | 84 | 25.00% | 75.00% |
| Japonica Intermediate | 64 | 14.06% | 85.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004868108 | A->G | LOC_Os10g08970(LOC_Os10g08970.1) | Synonymous |