Detailed information of SNP:
|
SNP ID:
sf1004882523(Gbrowse)
Chromosome: chr10 Position: 4882523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 79.63% | 20.37% |
| All Indica | 795 | 69.43% | 30.57% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 65.24% | 34.76% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 208 | 76.92% | 23.08% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004882523 | G->A | INTERGENIC | None |