Detailed information of SNP:
|
SNP ID:
sf1004890929(Gbrowse)
Chromosome: chr10 Position: 4890929 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 83.08% | 16.92% |
| All Indica | 782 | 75.45% | 24.55% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 75.07% | 24.93% |
| Indica II | 212 | 72.64% | 27.36% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004890929 | G->A | INTERGENIC | None |