Detailed information of SNP:
|
SNP ID:
sf1004895818(Gbrowse)
Chromosome: chr10 Position: 4895818 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 81.77% | 18.23% |
| All Indica | 790 | 72.66% | 27.34% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 68.83% | 31.17% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004895818 | G->T | INTERGENIC | None |