Detailed information of SNP:
|
SNP ID:
sf1004897168(Gbrowse)
Chromosome: chr10 Position: 4897168 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 84.62% | 15.38% |
| All Indica | 767 | 77.71% | 22.29% |
| All Japonica | 496 | 93.95% | 6.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 76.57% | 23.43% |
| Indica II | 209 | 74.16% | 25.84% |
| Indica Intermediate | 208 | 83.17% | 16.83% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004897168 | G->T | INTERGENIC | None |