Detailed information of SNP:
|
SNP ID:
sf1004907543(Gbrowse)
Chromosome: chr10 Position: 4907543 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.32% | 41.68% |
| All Indica | 798 | 37.22% | 62.78% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 36.90% | 63.10% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004907543 | C->T | LOC_Os10g09040(LOC_Os10g09040.1) | Synonymous |