Detailed information of SNP:
|
SNP ID:
sf1004908824(Gbrowse)
Chromosome: chr10 Position: 4908824 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.71% | 46.29% |
| All Indica | 798 | 35.46% | 64.54% |
| All Japonica | 496 | 87.90% | 12.10% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 36.27% | 63.73% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 210 | 30.48% | 69.52% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004908824 | G->C | INTERGENIC | None |