Detailed information of SNP:
|
SNP ID:
sf1004974455(Gbrowse)
Chromosome: chr10 Position: 4974455 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 67.59% | 32.41% |
| All Indica | 748 | 91.04% | 8.96% |
| All Japonica | 477 | 28.09% | 71.91% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 353 | 92.07% | 7.93% |
| Indica II | 197 | 91.37% | 8.63% |
| Indica Intermediate | 198 | 88.89% | 11.11% |
| Temperate Japonica | 324 | 21.60% | 78.40% |
| Tropical Japonica | 91 | 43.96% | 56.04% |
| Japonica Intermediate | 62 | 38.71% | 61.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004974455 | A->T | LOC_Os10g09180(LOC_Os10g09180.1) | Non-Synonymous SNP |