Detailed information of SNP:
|
SNP ID:
sf1004979708(Gbrowse)
Chromosome: chr10 Position: 4979708 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.43% | 29.57% |
| All Indica | 797 | 92.60% | 7.40% |
| All Japonica | 497 | 33.60% | 66.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004979708 | A->G | INTERGENIC | None |