Detailed information of SNP:
|
SNP ID:
sf1004979946(Gbrowse)
Chromosome: chr10 Position: 4979946 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 94.28% | 5.72% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 495 | 91.72% | 8.28% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1004979946 | G->A | INTERGENIC | None |