Detailed information of SNP:
|
SNP ID:
sf1005041642(Gbrowse)
Chromosome: chr10 Position: 5041642 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 85.71% | 14.29% |
| All Indica | 771 | 77.56% | 22.44% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 366 | 88.52% | 11.48% |
| Indica II | 208 | 70.19% | 29.81% |
| Indica Intermediate | 197 | 64.97% | 35.03% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005041642 | A->G | LOC_Os10g09290(LOC_Os10g09290.1) | INTRON |