Detailed information of SNP:
|
SNP ID:
sf1005048193(Gbrowse)
Chromosome: chr10 Position: 5048193 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 93.70% | 6.30% |
| All Indica | 794 | 91.56% | 8.44% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 211 | 80.57% | 19.43% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005048193 | A->G | INTERGENIC | None |