Detailed information of SNP:



SNP ID: sf1005048193(Gbrowse)

Chromosome: chr10

Position: 5048193
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1412 93.70% 6.30%
All Indica794 91.56% 8.44%
All Japonica496 95.77% 4.23%
Aus66 98.48% 1.52%
Indica I374 97.06% 2.94%
Indica II211 80.57% 19.43%
Indica Intermediate209 92.82% 7.18%
Temperate Japonica334 99.10% 0.90%
Tropical Japonica94 87.23% 12.77%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005048193 A->G INTERGENIC None