Detailed information of SNP:
|
SNP ID:
sf1005050739(Gbrowse)
Chromosome: chr10 Position: 5050739 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 95.93% | 4.07% |
| All Indica | 783 | 96.42% | 3.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 365 | 97.53% | 2.47% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005050739 | G->A | LOC_Os10g09310(LOC_Os10g09310.1) | INTRON |