Detailed information of SNP:
|
SNP ID:
sf1005052069(Gbrowse)
Chromosome: chr10 Position: 5052069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 69.89% | 30.11% |
| All Indica | 792 | 94.32% | 5.68% |
| All Japonica | 486 | 29.42% | 70.58% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 373 | 96.25% | 3.75% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 208 | 90.87% | 9.13% |
| Temperate Japonica | 328 | 22.56% | 77.44% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005052069 | A->G | LOC_Os10g09310(LOC_Os10g09310.1) | INTRON |