Detailed information of SNP:
|
SNP ID:
sf1005052691(Gbrowse)
Chromosome: chr10 Position: 5052691 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1340 | 96.94% | 3.06% |
| All Indica | 780 | 95.00% | 5.00% |
| All Japonica | 441 | 99.77% | 0.23% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 365 | 95.34% | 4.66% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 284 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005052691 | T->C | LOC_Os10g09310(LOC_Os10g09310.1) | Non-Synonymous SNP |