Detailed information of SNP:
|
SNP ID:
sf1005063437(Gbrowse)
Chromosome: chr10 Position: 5063437 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 87.75% | 12.25% |
| All Indica | 751 | 79.76% | 20.24% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 346 | 73.12% | 26.88% |
| Indica II | 208 | 85.10% | 14.90% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005063437 | G->A | LOC_Os10g09350(LOC_Os10g09350.1) | Non-Synonymous SNP |