Detailed information of SNP:
|
SNP ID:
sf1005065263(Gbrowse)
Chromosome: chr10 Position: 5065263 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 95.88% | 4.12% |
| All Indica | 768 | 92.71% | 7.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 357 | 91.60% | 8.40% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 203 | 91.63% | 8.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005065263 | G->A | LOC_Os10g09350(LOC_Os10g09350.1) | INTRON |