Detailed information of SNP:
|
SNP ID:
sf1005067063(Gbrowse)
Chromosome: chr10 Position: 5067063 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 52.16% | 47.84% |
| All Indica | 757 | 28.01% | 71.99% |
| All Japonica | 486 | 92.80% | 7.20% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 347 | 28.24% | 71.76% |
| Indica II | 208 | 24.52% | 75.48% |
| Indica Intermediate | 202 | 31.19% | 68.81% |
| Temperate Japonica | 329 | 97.87% | 2.13% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005067063 | T->A | LOC_Os10g09350(LOC_Os10g09350.1) | Synonymous |