Detailed information of SNP:
|
SNP ID:
sf1005067873(Gbrowse)
Chromosome: chr10 Position: 5067873 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 54.78% | 45.22% |
| All Indica | 759 | 29.64% | 70.36% |
| All Japonica | 474 | 95.36% | 4.64% |
| Aus | 61 | 45.90% | 54.10% |
| Indica I | 354 | 29.10% | 70.90% |
| Indica II | 203 | 31.53% | 68.47% |
| Indica Intermediate | 202 | 28.71% | 71.29% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 85 | 88.24% | 11.76% |
| Japonica Intermediate | 61 | 93.44% | 6.56% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005067873 | G->A | LOC_Os10g09350(LOC_Os10g09350.1) | Synonymous |