Detailed information of SNP:
|
SNP ID:
sf1005080439(Gbrowse)
Chromosome: chr10 Position: 5080439 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 50.80% | 49.20% |
| All Indica | 762 | 23.36% | 76.64% |
| All Japonica | 494 | 96.36% | 3.64% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 351 | 22.51% | 77.49% |
| Indica II | 205 | 22.93% | 77.07% |
| Indica Intermediate | 206 | 25.24% | 74.76% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005080439 | A->G | LOC_Os10g09390(LOC_Os10g09390.1) | Non-Synonymous SNP |