Detailed information of SNP:
|
SNP ID:
sf1005094975(Gbrowse)
Chromosome: chr10 Position: 5094975 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1328 | 90.96% | 9.04% |
| All Indica | 720 | 85.69% | 14.31% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 61 | 75.41% | 24.59% |
| Indica I | 340 | 82.06% | 17.94% |
| Indica II | 193 | 90.67% | 9.33% |
| Indica Intermediate | 187 | 87.17% | 12.83% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005094975 | G->C | LOC_Os10g09410(LOC_Os10g09410.1) | Non-Synonymous SNP |