Detailed information of SNP:
|
SNP ID:
sf1005095004(Gbrowse)
Chromosome: chr10 Position: 5095004 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1185 | 75.27% | 24.73% |
| All Indica | 599 | 56.93% | 43.07% |
| All Japonica | 483 | 99.79% | 0.21% |
| Aus | 56 | 53.57% | 46.43% |
| Indica I | 277 | 52.35% | 47.65% |
| Indica II | 161 | 69.57% | 30.43% |
| Indica Intermediate | 161 | 52.17% | 47.83% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 78.79% | 21.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005095004 | G->A | LOC_Os10g09410(LOC_Os10g09410.1) | Non-Synonymous SNP |