Detailed information of SNP:
|
SNP ID:
sf1005129283(Gbrowse)
Chromosome: chr10 Position: 5129283 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 78.15% | 21.85% |
| All Indica | 703 | 62.73% | 37.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 55 | 70.91% | 29.09% |
| Indica I | 327 | 79.20% | 20.80% |
| Indica II | 192 | 42.71% | 57.29% |
| Indica Intermediate | 184 | 54.35% | 45.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005129283 | G->T | LOC_Os10g09480(LOC_Os10g09480.1) | Non-Synonymous SNP |