Detailed information of SNP:
|
SNP ID:
sf1005165119(Gbrowse)
Chromosome: chr10 Position: 5165119 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 95.34% | 4.66% |
| All Indica | 782 | 92.33% | 7.67% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 367 | 94.01% | 5.99% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005165119 | G->A | INTERGENIC | None |