Detailed information of SNP:
|
SNP ID:
sf1005180775(Gbrowse)
Chromosome: chr10 Position: 5180775 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 62.58% | 37.42% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 491 | 18.13% | 81.87% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 331 | 18.43% | 81.57% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005180775 | A->G | LOC_Os10g09570(LOC_Os10g09570.1) | Synonymous |