Detailed information of SNP:
|
SNP ID:
sf1005181188(Gbrowse)
Chromosome: chr10 Position: 5181188 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 67.39% | 32.61% |
| All Indica | 797 | 92.60% | 7.40% |
| All Japonica | 466 | 21.67% | 78.33% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 84.83% | 15.17% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 309 | 21.04% | 78.96% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 65 | 18.46% | 81.54% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005181188 | C->A | LOC_Os10g09570(LOC_Os10g09570.1) | Non-Synonymous SNP |