Detailed information of SNP:
|
SNP ID:
sf1005187452(Gbrowse)
Chromosome: chr10 Position: 5187452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 57.14% | 42.86% |
| All Indica | 786 | 35.11% | 64.89% |
| All Japonica | 495 | 97.37% | 2.63% |
| Aus | 63 | 4.76% | 95.24% |
| Indica I | 367 | 29.70% | 70.30% |
| Indica II | 212 | 47.64% | 52.36% |
| Indica Intermediate | 207 | 31.88% | 68.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005187452 | C->T | LOC_Os10g09580(LOC_Os10g09580.1) | INTRON |