Detailed information of SNP:



SNP ID: sf1005190831(Gbrowse)

Chromosome: chr10

Position: 5190831
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1400 94.07% 5.93%
All Indica780 89.74% 10.26%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I362 90.88% 9.12%
Indica II208 90.87% 9.13%
Indica Intermediate210 86.67% 13.33%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005190831 C->T LOC_Os10g09580(LOC_Os10g09580.1) Synonymous