Detailed information of SNP:
|
SNP ID:
sf1005193490(Gbrowse)
Chromosome: chr10 Position: 5193490 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 86.41% | 13.59% |
| All Indica | 772 | 80.18% | 19.82% |
| All Japonica | 490 | 95.31% | 4.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 80.55% | 19.45% |
| Indica II | 205 | 76.10% | 23.90% |
| Indica Intermediate | 202 | 83.66% | 16.34% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005193490 | A->G | LOC_Os10g09580(LOC_Os10g09580.1) | INTRON |