Detailed information of SNP:
|
SNP ID:
sf1005194213(Gbrowse)
Chromosome: chr10 Position: 5194213 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 62.76% | 37.24% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 487 | 14.58% | 85.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 327 | 7.95% | 92.05% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005194213 | A->G | INTERGENIC | None |