Detailed information of SNP:
|
SNP ID:
sf1005219773(Gbrowse)
Chromosome: chr10 Position: 5219773 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 65.16% | 34.84% |
| All Indica | 797 | 93.85% | 6.15% |
| All Japonica | 493 | 14.60% | 85.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 331 | 7.25% | 92.75% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005219773 | A->G | LOC_Os10g09620(LOC_Os10g09620.1) | Non-Synonymous SNP |