Detailed information of SNP:
|
SNP ID:
sf1005219965(Gbrowse)
Chromosome: chr10 Position: 5219965 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 64.35% | 35.65% |
| All Indica | 796 | 93.22% | 6.78% |
| All Japonica | 492 | 13.82% | 86.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 333 | 6.91% | 93.09% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005219965 | T->C | LOC_Os10g09620(LOC_Os10g09620.1) | INTRON |