Detailed information of SNP:
|
SNP ID:
sf1005221582(Gbrowse)
Chromosome: chr10 Position: 5221582 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 65.60% | 34.40% |
| All Indica | 799 | 94.12% | 5.88% |
| All Japonica | 485 | 15.26% | 84.74% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 323 | 8.98% | 91.02% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005221582 | T->C | INTERGENIC | None |