Detailed information of SNP:
|
SNP ID:
sf1005229811(Gbrowse)
Chromosome: chr10 Position: 5229811 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.14% | 32.86% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 494 | 20.24% | 79.76% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 333 | 16.22% | 83.78% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005229811 | C->A | LOC_Os10g09630(LOC_Os10g09630.1) | Synonymous |