Detailed information of SNP:



SNP ID: sf1005229811(Gbrowse)

Chromosome: chr10

Position: 5229811
Major allele: A

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1415 67.14% 32.86%
All Indica798 94.24% 5.76%
All Japonica494 20.24% 79.76%
Aus67 98.51% 1.49%
Indica I374 98.93% 1.07%
Indica II213 86.38% 13.62%
Indica Intermediate211 93.84% 6.16%
Temperate Japonica333 16.22% 83.78%
Tropical Japonica94 35.11% 64.89%
Japonica Intermediate67 19.40% 80.60%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005229811 C->A LOC_Os10g09630(LOC_Os10g09630.1) Synonymous