Detailed information of SNP:
SNP ID:
sf1005284902(Gbrowse)
Chromosome: chr10 Position: 5284902 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1416 | 52.40% | 47.60% |
All Indica | 796 | 30.53% | 69.47% |
All Japonica | 497 | 92.76% | 7.24% |
Aus | 67 | 0.00% | 100.00% |
Indica I | 374 | 25.40% | 74.60% |
Indica II | 213 | 44.13% | 55.87% |
Indica Intermediate | 209 | 25.84% | 74.16% |
Temperate Japonica | 335 | 91.34% | 8.66% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 71.43% | 28.57% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1005284902 | A->G | INTERGENIC | None |