Detailed information of SNP:
|
SNP ID:
sf1005286864(Gbrowse)
Chromosome: chr10 Position: 5286864 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 53.05% | 46.95% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 489 | 20.86% | 79.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 74.33% | 25.67% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 328 | 28.96% | 71.04% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005286864 | A->G | LOC_Os10g09740(LOC_Os10g09740.1) | INTRON |