Detailed information of SNP:



SNP ID: sf1005286864(Gbrowse)

Chromosome: chr10

Position: 5286864
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1410 53.05% 46.95%
All Indica798 69.92% 30.08%
All Japonica489 20.86% 79.14%
Aus67 100.00% 0.00%
Indica I374 74.33% 25.67%
Indica II213 56.34% 43.66%
Indica Intermediate211 75.83% 24.17%
Temperate Japonica328 28.96% 71.04%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate67 4.48% 95.52%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 40.48% 59.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1005286864 A->G LOC_Os10g09740(LOC_Os10g09740.1) INTRON