Detailed information of SNP:
|
SNP ID:
sf1005313951(Gbrowse)
Chromosome: chr10 Position: 5313951 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.02% | 34.98% |
| All Indica | 798 | 50.38% | 49.62% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 58.40% | 41.60% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005313951 | C->T | INTERGENIC | None |