Detailed information of SNP:
|
SNP ID:
sf1005322548(Gbrowse)
Chromosome: chr10 Position: 5322548 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.49% | 41.51% |
| All Indica | 799 | 49.56% | 50.44% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 57.60% | 42.40% |
| Indica II | 213 | 47.42% | 52.58% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005322548 | A->G | LOC_Os10g09810(LOC_Os10g09810.1) | INTRON |