Detailed information of SNP:
|
SNP ID:
sf1005335073(Gbrowse)
Chromosome: chr10 Position: 5335073 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 68.44% | 31.56% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 494 | 21.46% | 78.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 20.72% | 79.28% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005335073 | G->A | LOC_Os10g09820(LOC_Os10g09820.1) | Non-Synonymous SNP |