Detailed information of SNP:
|
SNP ID:
sf1005363378(Gbrowse)
Chromosome: chr10 Position: 5363378 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 51.59% | 48.41% |
| All Indica | 798 | 56.39% | 43.61% |
| All Japonica | 495 | 36.57% | 63.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 59.36% | 40.64% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 43.13% | 56.87% |
| Temperate Japonica | 333 | 35.14% | 64.86% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005363378 | C->T | LOC_Os10g09870(LOC_Os10g09870.3) | UTR_5_PRIME |
| sf1005363378 | C->T | LOC_Os10g09870(LOC_Os10g09870.1) | UTR_5_PRIME |
| sf1005363378 | C->T | LOC_Os10g09870(LOC_Os10g09870.2) | UTR_5_PRIME |
| sf1005363378 | C->T | LOC_Os10g09870(LOC_Os10g09870.4) | UTR_5_PRIME |