Detailed information of SNP:
|
SNP ID:
sf1005372972(Gbrowse)
Chromosome: chr10 Position: 5372972 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.85% | 46.15% |
| All Indica | 798 | 56.89% | 43.11% |
| All Japonica | 496 | 42.34% | 57.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 210 | 43.33% | 56.67% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005372972 | T->C | INTERGENIC | None |