Detailed information of SNP:
|
SNP ID:
sf1005380799(Gbrowse)
Chromosome: chr10 Position: 5380799 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 85.90% | 14.10% |
| All Indica | 755 | 80.40% | 19.60% |
| All Japonica | 485 | 99.18% | 0.82% |
| Aus | 46 | 34.78% | 65.22% |
| Indica I | 351 | 75.21% | 24.79% |
| Indica II | 196 | 87.76% | 12.24% |
| Indica Intermediate | 208 | 82.21% | 17.79% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005380799 | A->G | LOC_Os10g09900(LOC_Os10g09900.1) | Non-Synonymous SNP |