Detailed information of SNP:
|
SNP ID:
sf1005381401(Gbrowse)
Chromosome: chr10 Position: 5381401 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 84.02% | 15.98% |
| All Indica | 755 | 76.95% | 23.05% |
| All Japonica | 485 | 99.18% | 0.82% |
| Aus | 46 | 34.78% | 65.22% |
| Indica I | 349 | 69.91% | 30.09% |
| Indica II | 198 | 86.87% | 13.13% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1005381401 | C->G | LOC_Os10g09900(LOC_Os10g09900.1) | INTRON |